J3_5LZX_003

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

5LZX|1|5|C|1237, 5LZX|1|5|C|1252, 5LZX|1|5|G|1271, 5LZX|1|5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZX|1|5|U|982
5LZX|1|5|C|983
5LZX|1|5|C|984
*
5LZX|1|5|G|1070
5LZX|1|5|C|1071
5LZX|1|5|C|1072
5LZX|1|5|G|1073
5LZX|1|5|G|1074
*
5LZX|1|5|C|1236
5LZX|1|5|C|1237
5LZX|1|5|A|1238
5LZX|1|5|C|1239
5LZX|1|5|G|1244
5LZX|1|5|C|1245
5LZX|1|5|G|1246
5LZX|1|5|U|1247
5LZX|1|5|C|1248
5LZX|1|5|C|1249
5LZX|1|5|C|1250
5LZX|1|5|C|1251
5LZX|1|5|C|1252
5LZX|1|5|G|1271
5LZX|1|5|C|1272
5LZX|1|5|G|1273

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain E

60S ribosomal protein L6

Chain F

uL30

Chain b

eL29