J3_5LZX_034
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 5LZX|1|5|U|354, 5LZX|1|5|A|362, 5LZX|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZX_034 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.062
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5LZX|1|5|C|351
5LZX|1|5|G|352
5LZX|1|5|A|353
5LZX|1|5|U|354
5LZX|1|5|A|355
5LZX|1|5|G|356
5LZX|1|5|U|357
5LZX|1|5|C|358
5LZX|1|5|A|359
5LZX|1|5|A|360
5LZX|1|5|C|361
5LZX|1|5|A|362
5LZX|1|5|A|363
5LZX|1|5|G|364
5LZX|1|5|U|365
5LZX|1|5|A|366
5LZX|1|5|C|367
*
5LZX|1|5|G|374
5LZX|1|5|G|375
5LZX|1|5|A|376
5LZX|1|5|A|377
5LZX|1|5|A|378
5LZX|1|5|G|379
*
5LZX|1|8|C|21
5LZX|1|8|U|22
5LZX|1|8|C|23
5LZX|1|8|G|24
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain Y
- uL24
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
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