J3_5LZZ_003

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

5LZZ|1|5|C|1237, 5LZZ|1|5|C|1252, 5LZZ|1|5|G|1271, 5LZZ|1|5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZZ|1|5|U|982
5LZZ|1|5|C|983
5LZZ|1|5|C|984
*
5LZZ|1|5|G|1070
5LZZ|1|5|C|1071
5LZZ|1|5|C|1072
5LZZ|1|5|G|1073
5LZZ|1|5|G|1074
*
5LZZ|1|5|C|1236
5LZZ|1|5|C|1237
5LZZ|1|5|A|1238
5LZZ|1|5|C|1239
5LZZ|1|5|G|1244
5LZZ|1|5|C|1245
5LZZ|1|5|G|1246
5LZZ|1|5|U|1247
5LZZ|1|5|C|1248
5LZZ|1|5|C|1249
5LZZ|1|5|C|1250
5LZZ|1|5|C|1251
5LZZ|1|5|C|1252
5LZZ|1|5|G|1271
5LZZ|1|5|C|1272
5LZZ|1|5|G|1273

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain E

60S ribosomal protein L6

Chain F

uL30

Chain b

eL29