J3_5LZZ_004

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

5LZZ|1|5|A|1534, 5LZZ|1|5|G|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZZ|1|5|G|1530
5LZZ|1|5|U|1531
5LZZ|1|5|G|1532
5LZZ|1|5|A|1533
5LZZ|1|5|A|1534
5LZZ|1|5|C|1535
5LZZ|1|5|U|1536
5LZZ|1|5|A|1537
*
5LZZ|1|5|U|1622
5LZZ|1|5|A|1623
5LZZ|1|5|G|1624
*
5LZZ|1|5|C|1640
5LZZ|1|5|G|1641
5LZZ|1|5|A|1642
5LZZ|1|5|A|1643
5LZZ|1|5|C|1644

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain C

uL4

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37

Chain l

eL39