J3_5LZZ_033

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

5LZZ|1|5|C|216, 5LZZ|1|5|C|217, 5LZZ|1|5|A|218, 5LZZ|1|5|G|219, 5LZZ|1|5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZZ|1|5|C|196
5LZZ|1|5|A|197
5LZZ|1|5|A|198
5LZZ|1|5|G|199
*
5LZZ|1|5|C|215
5LZZ|1|5|C|216
5LZZ|1|5|C|217
5LZZ|1|5|A|218
5LZZ|1|5|G|219
5LZZ|1|5|C|220
5LZZ|1|5|C|221
5LZZ|1|5|C|222
5LZZ|1|5|G|223
5LZZ|1|5|U|224
5LZZ|1|5|G|225
5LZZ|1|5|G|226
5LZZ|1|5|A|227
5LZZ|1|5|C|228
*
5LZZ|1|5|G|240
5LZZ|1|5|G|241
5LZZ|1|5|U|242
5LZZ|1|5|A|243
5LZZ|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Y

uL24