J3_5LZZ_042

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

5LZZ|1|5|U|4882, 5LZZ|1|5|A|4938, 5LZZ|1|5|C|4940, 5LZZ|1|5|A|4943, 5LZZ|1|5|C|4944, 5LZZ|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZZ|1|5|C|4749
5LZZ|1|5|G|4750
5LZZ|1|5|G|4751
5LZZ|1|5|U|4752
5LZZ|1|5|U|4753
5LZZ|1|5|G|4754
*
5LZZ|1|5|C|4879
5LZZ|1|5|C|4880
5LZZ|1|5|U|4881
5LZZ|1|5|U|4882
5LZZ|1|5|C|4883
*
5LZZ|1|5|G|4936
5LZZ|1|5|C|4937
5LZZ|1|5|A|4938
5LZZ|1|5|C|4939
5LZZ|1|5|C|4940
5LZZ|1|5|G|4941
5LZZ|1|5|C|4942
5LZZ|1|5|A|4943
5LZZ|1|5|C|4944
5LZZ|1|5|G|4945
5LZZ|1|5|U|4946
5LZZ|1|5|U|4947
5LZZ|1|5|C|4948
5LZZ|1|5|G|4949
5LZZ|1|5|U|4950
5LZZ|1|5|G|4951

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

eL14

Chain O

uL13

Chain f

eL33