J3_5MDV_003

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5MDV|1|1|U|686, 5MDV|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDV_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0512

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5MDV|1|1|U|683
5MDV|1|1|G|684
5MDV|1|1|A|685
5MDV|1|1|U|686
5MDV|1|1|C|687
5MDV|1|1|U|688
5MDV|1|1|A|689
*
5MDV|1|1|U|773
5MDV|1|1|G|774
5MDV|1|1|G|775
*
5MDV|1|1|C|791
5MDV|1|1|A|792
5MDV|1|1|A|793
5MDV|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34