J3_5MDV_004

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDV_004 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0504

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5MDV|1|1|C|698
5MDV|1|1|A|699
5MDV|1|1|G|700
*
5MDV|1|1|C|732
5MDV|1|1|G|733
5MDV|1|1|A|734
5MDV|1|1|A|735
5MDV|1|1|C|736
*
5MDV|1|1|G|760
5MDV|1|1|A|761
5MDV|1|1|U|762
5MDV|1|1|G|763

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2