J3_5MDV_005
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- AGGA*UUUAAAG*CACU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDV_005 not in the Motif Atlas
- Geometric match to J3_8VTW_042
- Geometric discrepancy: 0.2671
- The information below is about J3_8VTW_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46457.1
- Basepair signature
- cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5MDV|1|1|A|1054
5MDV|1|1|G|1055
5MDV|1|1|G|1056
5MDV|1|1|A|1057
*
5MDV|1|1|U|1081
5MDV|1|1|U|1082
5MDV|1|1|U|1083
5MDV|1|1|A|1084
5MDV|1|1|A|1085
5MDV|1|1|A|1086
5MDV|1|1|G|1087
*
5MDV|1|1|C|1102
5MDV|1|1|A|1103
5MDV|1|1|C|1104
5MDV|1|1|U|1105
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L10
- Chain I
- 50S ribosomal protein L11
- Chain f
- 50S ribosomal protein L36
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