J3_5MDV_010
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 5MDV|1|1|U|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDV_010 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.111
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5MDV|1|1|C|2295
5MDV|1|1|U|2296
5MDV|1|1|A|2297
5MDV|1|1|A|2298
5MDV|1|1|U|2299
*
5MDV|1|1|A|2317
5MDV|1|1|G|2318
5MDV|1|1|G|2319
5MDV|1|1|U|2320
5MDV|1|1|U|2321
5MDV|1|1|A|2322
5MDV|1|1|G|2323
*
5MDV|1|1|C|2332
5MDV|1|1|A|2333
5MDV|1|1|U|2334
5MDV|1|1|A|2335
5MDV|1|1|A|2336
5MDV|1|1|G|2337
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain E
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
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