J3_5MDV_034

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5MDV|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDV_034 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1174

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5MDV|1|2|C|990
5MDV|1|2|U|991
5MDV|1|2|U|992
5MDV|1|2|G|993
5MDV|1|2|A|994
5MDV|1|2|C|995
5MDV|1|2|A|996
5MDV|1|2|U|997
*
5MDV|1|2|A|1044
5MDV|1|2|C|1045
5MDV|1|2|A|1046
5MDV|1|2|G|1047
*
5MDV|1|2|C|1210
5MDV|1|2|U|1211
5MDV|1|2|U|1212
5MDV|1|2|A|1213
5MDV|1|2|C|1214
5MDV|1|2|G|1215

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 7

Peptide chain release factor 2

Chain s

30S ribosomal protein S14