J3_5MDY_003

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5MDY|1|1|U|686, 5MDY|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDY_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0585

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5MDY|1|1|U|683
5MDY|1|1|G|684
5MDY|1|1|A|685
5MDY|1|1|U|686
5MDY|1|1|C|687
5MDY|1|1|U|688
5MDY|1|1|A|689
*
5MDY|1|1|U|773
5MDY|1|1|G|774
5MDY|1|1|G|775
*
5MDY|1|1|C|791
5MDY|1|1|A|792
5MDY|1|1|A|793
5MDY|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34