J3_5MDY_018

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDY_018 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0706

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5MDY|1|2|C|936
5MDY|1|2|A|937
5MDY|1|2|A|938
5MDY|1|2|G|939
*
5MDY|1|2|C|1344
5MDY|1|2|U|1345
5MDY|1|2|A|1346
5MDY|1|2|G|1347
5MDY|1|2|U|1348
5MDY|1|2|A|1349
5MDY|1|2|A|1350
*
5MDY|1|2|U|1372
5MDY|1|2|G|1373
5MDY|1|2|A|1374
5MDY|1|2|A|1375
5MDY|1|2|U|1376
5MDY|1|2|A|1377
5MDY|1|2|C|1378
5MDY|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9