J3_5MDZ_018

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDZ_018 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0664

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5MDZ|1|2|C|936
5MDZ|1|2|A|937
5MDZ|1|2|A|938
5MDZ|1|2|G|939
*
5MDZ|1|2|C|1344
5MDZ|1|2|U|1345
5MDZ|1|2|A|1346
5MDZ|1|2|G|1347
5MDZ|1|2|U|1348
5MDZ|1|2|A|1349
5MDZ|1|2|A|1350
*
5MDZ|1|2|U|1372
5MDZ|1|2|G|1373
5MDZ|1|2|A|1374
5MDZ|1|2|A|1375
5MDZ|1|2|U|1376
5MDZ|1|2|A|1377
5MDZ|1|2|C|1378
5MDZ|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9