J3_5MDZ_029

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5MDZ|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDZ_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0459

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5MDZ|1|1|G|297
5MDZ|1|1|G|298
5MDZ|1|1|A|299
5MDZ|1|1|A|300
5MDZ|1|1|G|301
*
5MDZ|1|1|C|316
5MDZ|1|1|G|317
5MDZ|1|1|C|318
5MDZ|1|1|G|319
5MDZ|1|1|A|320
5MDZ|1|1|U|321
5MDZ|1|1|A|322
5MDZ|1|1|C|323
5MDZ|1|1|A|324
5MDZ|1|1|G|325
*
5MDZ|1|1|C|337
5MDZ|1|1|G|338
5MDZ|1|1|U|339
5MDZ|1|1|A|340
5MDZ|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24