J3_5MDZ_031
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5MDZ|1|1|A|2388, 5MDZ|1|1|U|2390, 5MDZ|1|1|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDZ_031 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0699
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5MDZ|1|1|G|2282
5MDZ|1|1|C|2283
5MDZ|1|1|A|2284
*
5MDZ|1|1|U|2384
5MDZ|1|1|C|2385
5MDZ|1|1|A|2386
5MDZ|1|1|U|2387
5MDZ|1|1|A|2388
5MDZ|1|1|G|2389
5MDZ|1|1|U|2390
5MDZ|1|1|G|2391
5MDZ|1|1|A|2392
5MDZ|1|1|U|2393
5MDZ|1|1|C|2394
5MDZ|1|1|C|2395
*
5MDZ|1|1|G|2421
5MDZ|1|1|C|2422
5MDZ|1|1|U|2423
5MDZ|1|1|C|2424
5MDZ|1|1|A|2425
5MDZ|1|1|A|2426
5MDZ|1|1|C|2427
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
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