J3_5MDZ_034

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5MDZ|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDZ_034 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1237

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5MDZ|1|2|C|990
5MDZ|1|2|U|991
5MDZ|1|2|U|992
5MDZ|1|2|G|993
5MDZ|1|2|A|994
5MDZ|1|2|C|995
5MDZ|1|2|A|996
5MDZ|1|2|U|997
*
5MDZ|1|2|A|1044
5MDZ|1|2|C|1045
5MDZ|1|2|A|1046
5MDZ|1|2|G|1047
*
5MDZ|1|2|C|1210
5MDZ|1|2|U|1211
5MDZ|1|2|U|1212
5MDZ|1|2|A|1213
5MDZ|1|2|C|1214
5MDZ|1|2|G|1215

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14