J3_5ME0_007

3D structure

PDB id

5ME0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ME0_007 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1122

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5ME0|1|A|C|990
5ME0|1|A|U|991
5ME0|1|A|U|992
5ME0|1|A|G|993
*
5ME0|1|A|C|1045
5ME0|1|A|A|1046
5ME0|1|A|G|1047
*
5ME0|1|A|C|1210
5ME0|1|A|U|1211
5ME0|1|A|U|1212
5ME0|1|A|A|1213
5ME0|1|A|C|1214
5ME0|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14