3D structure

PDB id
5MGP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AC*GAUAAGC*GAUUU
Length
14 nucleotides
Bulged bases
5MGP|1|A|A|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5MGP_002 not in the Motif Atlas
Homologous match to J3_5J7L_037
Geometric discrepancy: 0.0819
The information below is about J3_5J7L_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

5MGP|1|A|A|56
5MGP|1|A|C|57
*
5MGP|1|A|G|70
5MGP|1|A|A|71
5MGP|1|A|U|72
5MGP|1|A|A|73
5MGP|1|A|A|74
5MGP|1|A|G|75
5MGP|1|A|C|76
*
5MGP|1|A|G|110
5MGP|1|A|A|111
5MGP|1|A|U|112
5MGP|1|A|U|113
5MGP|1|A|U|114

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain T
50S ribosomal protein L23
Chain Y
50S ribosomal protein L29

Coloring options:


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