J3_5MGP_008

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGAACUAGG*CUG*CC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MGP|1|A|G|1663
5MGP|1|A|A|1664
5MGP|1|A|A|1665
5MGP|1|A|G|1666
5MGP|1|A|G|1667
5MGP|1|A|A|1668
5MGP|1|A|A|1669
5MGP|1|A|C|1670
5MGP|1|A|U|1671
5MGP|1|A|A|1672
5MGP|1|A|G|1673
5MGP|1|A|G|1674
*
5MGP|1|A|C|1990
5MGP|1|A|U|1991
5MGP|1|A|G|1992
*
5MGP|1|A|C|1996
5MGP|1|A|C|1997

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19