J3_5MGP_028

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5MGP|1|A|U|321, 5MGP|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MGP_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1478

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5MGP|1|A|G|297
5MGP|1|A|G|298
5MGP|1|A|A|299
5MGP|1|A|A|300
5MGP|1|A|G|301
*
5MGP|1|A|C|316
5MGP|1|A|G|317
5MGP|1|A|C|318
5MGP|1|A|G|319
5MGP|1|A|A|320
5MGP|1|A|U|321
5MGP|1|A|A|322
5MGP|1|A|C|323
5MGP|1|A|A|324
5MGP|1|A|G|325
*
5MGP|1|A|C|337
5MGP|1|A|G|338
5MGP|1|A|U|339
5MGP|1|A|A|340
5MGP|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24