J3_5MGP_034

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5MGP|1|a|U|1212, 5MGP|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MGP_034 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1353

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5MGP|1|a|C|990
5MGP|1|a|U|991
5MGP|1|a|U|992
5MGP|1|a|G|993
5MGP|1|a|A|994
5MGP|1|a|C|995
5MGP|1|a|A|996
5MGP|1|a|U|997
*
5MGP|1|a|A|1044
5MGP|1|a|C|1045
5MGP|1|a|A|1046
5MGP|1|a|G|1047
*
5MGP|1|a|C|1210
5MGP|1|a|U|1211
5MGP|1|a|U|1212
5MGP|1|a|A|1213
5MGP|1|a|C|1214
5MGP|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14

Chain z

Peptide chain release factor 2