J3_5MLC_001
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GC*GAAAUGC*GAUUC
- Length
- 14 nucleotides
- Bulged bases
- 5MLC|1|A|U|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MLC_001 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.1237
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5MLC|1|A|G|55
5MLC|1|A|C|56
*
5MLC|1|A|G|69
5MLC|1|A|A|70
5MLC|1|A|A|71
5MLC|1|A|A|72
5MLC|1|A|U|73
5MLC|1|A|G|74
5MLC|1|A|C|75
*
5MLC|1|A|G|108
5MLC|1|A|A|109
5MLC|1|A|U|110
5MLC|1|A|U|111
5MLC|1|A|C|112
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 4
- 50S ribosomal protein L34, chloroplastic
- Chain V
- 50S ribosomal protein L23, chloroplastic
- Chain W
- 50S ribosomal protein L24, chloroplastic
- Chain Z
- 50S ribosomal protein L29, chloroplastic
Coloring options: