J3_5MLC_002
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAAAC*GGGUUGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 5MLC|1|A|U|275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MLC_002 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.2866
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MLC|1|A|U|254
5MLC|1|A|A|255
5MLC|1|A|A|256
5MLC|1|A|A|257
5MLC|1|A|C|258
*
5MLC|1|A|G|269
5MLC|1|A|G|270
5MLC|1|A|G|271
5MLC|1|A|U|272
5MLC|1|A|U|273
5MLC|1|A|G|274
5MLC|1|A|U|275
5MLC|1|A|G|276
*
5MLC|1|A|C|381
5MLC|1|A|G|382
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain Y
- 50S ribosomal protein L28, chloroplastic
Coloring options: