J3_5MLC_004

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MLC_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0691

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5MLC|1|A|C|709
5MLC|1|A|A|710
5MLC|1|A|G|711
*
5MLC|1|A|C|743
5MLC|1|A|G|744
5MLC|1|A|A|745
5MLC|1|A|A|746
5MLC|1|A|C|747
*
5MLC|1|A|G|771
5MLC|1|A|A|772
5MLC|1|A|U|773
5MLC|1|A|G|774

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic

Chain D

50S ribosomal protein L2, chloroplastic