J3_5MLC_015

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGGAUAC*GUGAAAAGAAC*GAGUGAAAUAGAACAUGAAAC

Length

40 nucleotides

Bulged bases

5MLC|1|A|U|515, 5MLC|1|A|A|519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MLC|1|A|G|23
5MLC|1|A|U|24
5MLC|1|A|G|25
5MLC|1|A|G|26
5MLC|1|A|A|27
5MLC|1|A|U|28
5MLC|1|A|A|29
5MLC|1|A|C|30
*
5MLC|1|A|G|486
5MLC|1|A|U|487
5MLC|1|A|G|488
5MLC|1|A|A|489
5MLC|1|A|A|490
5MLC|1|A|A|491
5MLC|1|A|A|492
5MLC|1|A|G|493
5MLC|1|A|A|494
5MLC|1|A|A|495
5MLC|1|A|C|496
*
5MLC|1|A|G|507
5MLC|1|A|A|508
5MLC|1|A|G|509
5MLC|1|A|U|510
5MLC|1|A|G|511
5MLC|1|A|A|512
5MLC|1|A|A|513
5MLC|1|A|A|514
5MLC|1|A|U|515
5MLC|1|A|A|516
5MLC|1|A|G|517
5MLC|1|A|A|518
5MLC|1|A|A|519
5MLC|1|A|C|520
5MLC|1|A|A|521
5MLC|1|A|U|522
5MLC|1|A|G|523
5MLC|1|A|A|524
5MLC|1|A|A|525
5MLC|1|A|A|526
5MLC|1|A|C|527

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 2

50S ribosomal protein L32, chloroplastic

Chain S

50S ribosomal protein L20, chloroplastic

Chain U

50S ribosomal protein L22, chloroplastic

Chain W

50S ribosomal protein L24, chloroplastic