J3_5MLC_020
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUG*CCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5MLC|1|A|A|2405, 5MLC|1|A|U|2407, 5MLC|1|A|A|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MLC_020 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.112
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5MLC|1|A|G|2299
5MLC|1|A|U|2300
5MLC|1|A|G|2301
*
5MLC|1|A|C|2401
5MLC|1|A|C|2402
5MLC|1|A|U|2403
5MLC|1|A|U|2404
5MLC|1|A|A|2405
5MLC|1|A|G|2406
5MLC|1|A|U|2407
5MLC|1|A|G|2408
5MLC|1|A|A|2409
5MLC|1|A|U|2410
5MLC|1|A|C|2411
5MLC|1|A|C|2412
*
5MLC|1|A|G|2438
5MLC|1|A|C|2439
5MLC|1|A|U|2440
5MLC|1|A|C|2441
5MLC|1|A|A|2442
5MLC|1|A|A|2443
5MLC|1|A|C|2444
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 3
- 50S ribosomal protein L33, chloroplastic
- Chain 5
- 50S ribosomal protein L35, chloroplastic
- Chain N
- 50S ribosomal protein L15, chloroplastic
- Chain X
- 50S ribosomal protein L27, chloroplastic
Coloring options: