J3_5MLC_022
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCCUAGG*CG*UCGA
- Length
- 13 nucleotides
- Bulged bases
- 5MLC|1|B|U|14, 5MLC|1|B|A|15, 5MLC|1|B|C|110
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MLC_022 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.4572
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5MLC|1|B|U|11
5MLC|1|B|C|12
5MLC|1|B|C|13
5MLC|1|B|U|14
5MLC|1|B|A|15
5MLC|1|B|G|16
5MLC|1|B|G|17
*
5MLC|1|B|C|69
5MLC|1|B|G|70
*
5MLC|1|B|U|109
5MLC|1|B|C|110
5MLC|1|B|G|111
5MLC|1|B|A|112
Current chains
- Chain B
- 5S ribosomal RNA, chloroplastic
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S ribosomal protein L18, chloroplastic
- Chain X
- 50S ribosomal protein L27, chloroplastic
Coloring options: