J3_5MQF_001
3D structure
- PDB id
- 5MQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.9 Å
Loop
- Sequence
- GCCUUUUGG*CAU*ACGCAAAUU
- Length
- 21 nucleotides
- Bulged bases
- 5MQF|1|2|U|17, 5MQF|1|2|U|18, 5MQF|1|2|G|19, 5MQF|1|6|A|83, 5MQF|1|6|A|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MQF|1|2|G|12
5MQF|1|2|C|13
5MQF|1|2|C|14
5MQF|1|2|U|15
5MQF|1|2|U|16
5MQF|1|2|U|17
5MQF|1|2|U|18
5MQF|1|2|G|19
5MQF|1|2|G|20
*
5MQF|1|6|C|55
5MQF|1|6|A|56
5MQF|1|6|U|57
*
5MQF|1|6|A|78
5MQF|1|6|C|79
5MQF|1|6|G|80
5MQF|1|6|C|81
5MQF|1|6|A|82
5MQF|1|6|A|83
5MQF|1|6|A|84
5MQF|1|6|U|85
5MQF|1|6|U|86
Current chains
- Chain 2
- Human gene for small nuclear RNA U2 (snRNA U2)
- Chain 6
- Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain C
- SNW domain-containing protein 1
- Chain D
- Pleiotropic regulator 1
- Chain L
- Cell division cycle 5-like protein
- Chain N
- Pre-mRNA-splicing factor SYF2
- Chain O
- Crooked neck-like protein 1
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