J3_5MRE_013

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUC*GUU*AUUAAAA

Length

14 nucleotides

Bulged bases

5MRE|1|A|U|2784, 5MRE|1|A|U|2785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRE_013 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1397

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5MRE|1|A|U|2783
5MRE|1|A|U|2784
5MRE|1|A|U|2785
5MRE|1|A|C|2786
*
5MRE|1|A|G|2812
5MRE|1|A|U|2813
5MRE|1|A|U|2814
*
5MRE|1|A|A|2828
5MRE|1|A|U|2829
5MRE|1|A|U|2830
5MRE|1|A|A|2831
5MRE|1|A|A|2832
5MRE|1|A|A|2833
5MRE|1|A|A|2834

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain I

uL14m