J3_5MRF_016

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

AC*GGAAUAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRF_016 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.105

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MRF|1|aa|A|53
5MRF|1|aa|C|54
*
5MRF|1|aa|G|365
5MRF|1|aa|G|366
5MRF|1|aa|A|367
5MRF|1|aa|A|368
5MRF|1|aa|U|369
5MRF|1|aa|A|370
5MRF|1|aa|U|371
*
5MRF|1|aa|A|397
5MRF|1|aa|G|398
5MRF|1|aa|U|399

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain LL

uS12m

Chain PP

bS16m