J3_5NCO_003

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5NCO|1|A|U|686, 5NCO|1|A|A|792, 5NCO|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NCO_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.078

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|U|683
5NCO|1|A|G|684
5NCO|1|A|A|685
5NCO|1|A|U|686
5NCO|1|A|C|687
5NCO|1|A|U|688
5NCO|1|A|A|689
*
5NCO|1|A|U|773
5NCO|1|A|G|774
5NCO|1|A|G|775
*
5NCO|1|A|C|791
5NCO|1|A|A|792
5NCO|1|A|A|793
5NCO|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34