J3_5NCO_011

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5NCO|1|A|A|2518, 5NCO|1|A|U|2519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NCO_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0874

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5NCO|1|A|C|2517
5NCO|1|A|A|2518
5NCO|1|A|U|2519
5NCO|1|A|C|2520
*
5NCO|1|A|G|2545
5NCO|1|A|U|2546
5NCO|1|A|A|2547
*
5NCO|1|A|U|2561
5NCO|1|A|U|2562
5NCO|1|A|U|2563
5NCO|1|A|A|2564
5NCO|1|A|A|2565
5NCO|1|A|A|2566
5NCO|1|A|G|2567

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14