J3_5ND8_003

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

5ND8|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND8_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.181

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5ND8|1|A|C|272
5ND8|1|A|A|273
5ND8|1|A|A|274
5ND8|1|A|A|275
5ND8|1|A|C|276
*
5ND8|1|A|G|295
5ND8|1|A|G|296
5ND8|1|A|G|297
5ND8|1|A|U|298
5ND8|1|A|U|299
5ND8|1|A|G|300
5ND8|1|A|U|301
5ND8|1|A|A|302
*
5ND8|1|A|U|415
5ND8|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains