J3_5ND8_006

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND8_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1554

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5ND8|1|A|C|1335
5ND8|1|A|G|1336
5ND8|1|A|A|1337
5ND8|1|A|U|1338
5ND8|1|A|U|1339
5ND8|1|A|G|1340
*
5ND8|1|A|C|1669
5ND8|1|A|A|1670
5ND8|1|A|A|1671
*
5ND8|1|A|U|1683
5ND8|1|A|A|1684
5ND8|1|A|A|1685
5ND8|1|A|G|1686

Current chains

Chain A

23S ribosomal RNA

Nearby chains