J3_5ND8_007

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAAG*CGCAAAC*GUA

Length

14 nucleotides

Bulged bases

5ND8|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND8_007 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1618

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5ND8|1|A|U|1343
5ND8|1|A|A|1344
5ND8|1|A|A|1345
5ND8|1|A|G|1346
*
5ND8|1|A|C|1649
5ND8|1|A|G|1650
5ND8|1|A|C|1651
5ND8|1|A|A|1652
5ND8|1|A|A|1653
5ND8|1|A|A|1654
5ND8|1|A|C|1655
*
5ND8|1|A|G|1664
5ND8|1|A|U|1665
5ND8|1|A|A|1666

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34