J3_5ND8_009

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND8_009 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.2043

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5ND8|1|A|U|2118
5ND8|1|A|U|2119
5ND8|1|A|G|2120
*
5ND8|1|A|C|2223
5ND8|1|A|U|2224
5ND8|1|A|A|2225
5ND8|1|A|A|2226
5ND8|1|A|C|2227
5ND8|1|A|C|2228
*
5ND8|1|A|G|2249
5ND8|1|A|A|2250
5ND8|1|A|G|2251
5ND8|1|A|A|2252
5ND8|1|A|C|2253
5ND8|1|A|A|2254
5ND8|1|A|G|2255

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain D

50S ribosomal protein L2