J3_5ND8_019
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5ND8|1|a|A|985, 5ND8|1|a|G|986
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND8_019 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1908
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5ND8|1|a|U|965
5ND8|1|a|U|966
5ND8|1|a|U|967
5ND8|1|a|A|968
5ND8|1|a|A|969
5ND8|1|a|U|970
5ND8|1|a|U|971
5ND8|1|a|C|972
*
5ND8|1|a|G|983
5ND8|1|a|A|984
5ND8|1|a|A|985
5ND8|1|a|G|986
5ND8|1|a|A|987
5ND8|1|a|A|988
5ND8|1|a|C|989
5ND8|1|a|C|990
5ND8|1|a|U|991
5ND8|1|a|U|992
5ND8|1|a|A|993
5ND8|1|a|C|994
*
5ND8|1|a|G|1232
5ND8|1|a|G|1233
5ND8|1|a|C|1234
5ND8|1|a|U|1235
5ND8|1|a|A|1236
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
- Chain s
- 30S ribosomal protein S19
- Chain v
- Ribosome hibernation promotion factor
Coloring options: