J3_5ND8_023
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- 5ND8|1|a|A|1113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND8_023 not in the Motif Atlas
- Homologous match to J3_6CZR_024
- Geometric discrepancy: 0.2353
- The information below is about J3_6CZR_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04260.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5ND8|1|a|U|1085
5ND8|1|a|G|1086
*
5ND8|1|a|U|1095
5ND8|1|a|G|1096
5ND8|1|a|U|1097
5ND8|1|a|U|1098
5ND8|1|a|G|1099
*
5ND8|1|a|C|1110
5ND8|1|a|G|1111
5ND8|1|a|C|1112
5ND8|1|a|A|1113
5ND8|1|a|A|1114
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain e
- 30S ribosomal protein S5
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