J3_5ND8_030

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCC*GUUAAU*AAUCGA

Length

15 nucleotides

Bulged bases

5ND8|1|A|U|2853, 5ND8|1|A|A|2855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|A|U|2833
5ND8|1|A|C|2834
5ND8|1|A|C|2835
*
5ND8|1|A|G|2851
5ND8|1|A|U|2852
5ND8|1|A|U|2853
5ND8|1|A|A|2854
5ND8|1|A|A|2855
5ND8|1|A|U|2856
*
5ND8|1|A|A|2902
5ND8|1|A|A|2903
5ND8|1|A|U|2904
5ND8|1|A|C|2905
5ND8|1|A|G|2906
5ND8|1|A|A|2907

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain E

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17