J3_5ND8_036

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGACAAC*GCCUUCCC*GGGACA

Length

22 nucleotides

Bulged bases

5ND8|1|a|G|1047

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|a|U|1011
5ND8|1|a|U|1012
5ND8|1|a|G|1013
5ND8|1|a|A|1014
5ND8|1|a|C|1015
5ND8|1|a|A|1016
5ND8|1|a|A|1017
5ND8|1|a|C|1018
*
5ND8|1|a|G|1031
5ND8|1|a|C|1032
5ND8|1|a|C|1033
5ND8|1|a|U|1034
5ND8|1|a|U|1035
5ND8|1|a|C|1036
5ND8|1|a|C|1037
5ND8|1|a|C|1038
*
5ND8|1|a|G|1045
5ND8|1|a|G|1046
5ND8|1|a|G|1047
5ND8|1|a|A|1048
5ND8|1|a|C|1049
5ND8|1|a|A|1050

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain n

30S ribosomal protein S14 type Z