J3_5ND9_004

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5ND9|1|A|U|731, 5ND9|1|A|G|837, 5ND9|1|A|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND9_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1722

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5ND9|1|A|U|728
5ND9|1|A|G|729
5ND9|1|A|A|730
5ND9|1|A|U|731
5ND9|1|A|C|732
5ND9|1|A|U|733
5ND9|1|A|A|734
*
5ND9|1|A|U|818
5ND9|1|A|A|819
5ND9|1|A|G|820
*
5ND9|1|A|C|836
5ND9|1|A|G|837
5ND9|1|A|A|838
5ND9|1|A|A|839

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2