J3_5ND9_007
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAAG*CGCAAAC*GUA
- Length
- 14 nucleotides
- Bulged bases
- 5ND9|1|A|C|1651, 5ND9|1|A|A|1653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND9_007 not in the Motif Atlas
- Homologous match to J3_7RQB_008
- Geometric discrepancy: 0.1822
- The information below is about J3_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16623.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5ND9|1|A|U|1343
5ND9|1|A|A|1344
5ND9|1|A|A|1345
5ND9|1|A|G|1346
*
5ND9|1|A|C|1649
5ND9|1|A|G|1650
5ND9|1|A|C|1651
5ND9|1|A|A|1652
5ND9|1|A|A|1653
5ND9|1|A|A|1654
5ND9|1|A|C|1655
*
5ND9|1|A|G|1664
5ND9|1|A|U|1665
5ND9|1|A|A|1666
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
Coloring options: