J3_5ND9_027
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- ACUAUAG*CGACGAUGGUAG*UAGAGUAGAACGUU
- Length
- 33 nucleotides
- Bulged bases
- 5ND9|1|B|U|10, 5ND9|1|B|U|12, 5ND9|1|B|G|105
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ND9|1|B|A|8
5ND9|1|B|C|9
5ND9|1|B|U|10
5ND9|1|B|A|11
5ND9|1|B|U|12
5ND9|1|B|A|13
5ND9|1|B|G|14
*
5ND9|1|B|C|66
5ND9|1|B|G|67
5ND9|1|B|A|68
5ND9|1|B|C|69
5ND9|1|B|G|70
5ND9|1|B|A|71
5ND9|1|B|U|72
5ND9|1|B|G|73
5ND9|1|B|G|74
5ND9|1|B|U|75
5ND9|1|B|A|76
5ND9|1|B|G|77
*
5ND9|1|B|U|94
5ND9|1|B|A|95
5ND9|1|B|G|96
5ND9|1|B|A|97
5ND9|1|B|G|98
5ND9|1|B|U|99
5ND9|1|B|A|100
5ND9|1|B|G|101
5ND9|1|B|A|102
5ND9|1|B|A|103
5ND9|1|B|C|104
5ND9|1|B|G|105
5ND9|1|B|U|106
5ND9|1|B|U|107
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 50S ribosomal protein L16
- Chain R
- 50S ribosomal protein L18
- Chain Y
- 50S ribosomal protein L25
- Chain Z
- 50S ribosomal protein L27
Coloring options: