J3_5ND9_031

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

5ND9|1|a|U|1225

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND9_031 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1971

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5ND9|1|a|C|1000
5ND9|1|a|U|1001
5ND9|1|a|U|1002
5ND9|1|a|G|1003
5ND9|1|a|A|1004
5ND9|1|a|C|1005
5ND9|1|a|A|1006
5ND9|1|a|U|1007
*
5ND9|1|a|A|1056
5ND9|1|a|C|1057
5ND9|1|a|A|1058
5ND9|1|a|G|1059
*
5ND9|1|a|C|1221
5ND9|1|a|U|1222
5ND9|1|a|U|1223
5ND9|1|a|A|1224
5ND9|1|a|U|1225
5ND9|1|a|G|1226

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z