J3_5ND9_033

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGU*AUGUUG*CGCAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND9|1|a|U|1085
5ND9|1|a|G|1086
5ND9|1|a|U|1087
*
5ND9|1|a|A|1094
5ND9|1|a|U|1095
5ND9|1|a|G|1096
5ND9|1|a|U|1097
5ND9|1|a|U|1098
5ND9|1|a|G|1099
*
5ND9|1|a|C|1110
5ND9|1|a|G|1111
5ND9|1|a|C|1112
5ND9|1|a|A|1113
5ND9|1|a|A|1114

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain e

30S ribosomal protein S5