J3_5ND9_034
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 5ND9|1|a|U|1194
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND9_034 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.236
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5ND9|1|a|U|1128
5ND9|1|a|A|1129
5ND9|1|a|A|1130
*
5ND9|1|a|U|1166
5ND9|1|a|G|1167
5ND9|1|a|A|1168
5ND9|1|a|C|1169
5ND9|1|a|U|1170
5ND9|1|a|G|1171
5ND9|1|a|C|1172
*
5ND9|1|a|G|1186
5ND9|1|a|A|1187
5ND9|1|a|G|1188
5ND9|1|a|G|1189
5ND9|1|a|A|1190
5ND9|1|a|A|1191
5ND9|1|a|G|1192
5ND9|1|a|G|1193
5ND9|1|a|U|1194
5ND9|1|a|G|1195
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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