J3_5NDG_018
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5NDG|1|2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDG_018 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.088
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5NDG|1|2|A|881
5NDG|1|2|U|882
5NDG|1|2|C|883
5NDG|1|2|A|884
*
5NDG|1|2|U|928
5NDG|1|2|A|929
5NDG|1|2|A|930
5NDG|1|2|C|931
5NDG|1|2|U|932
5NDG|1|2|A|933
5NDG|1|2|C|934
5NDG|1|2|U|935
5NDG|1|2|G|936
*
5NDG|1|2|C|943
5NDG|1|2|A|944
5NDG|1|2|U|945
5NDG|1|2|U|946
5NDG|1|2|U|947
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S13
- Chain C4
- 40S ribosomal protein S14-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain Q3
- 60S ribosomal protein L43-A
- Chain S1
- 40S ribosomal protein S1-A
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