J3_5NDG_022
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 5NDG|1|2|G|1199, 5NDG|1|2|G|1201, 5NDG|1|2|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDG_022 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0853
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NDG|1|2|C|1180
5NDG|1|2|U|1181
5NDG|1|2|U|1182
5NDG|1|2|A|1183
5NDG|1|2|A|1184
5NDG|1|2|U|1185
5NDG|1|2|U|1186
5NDG|1|2|U|1187
*
5NDG|1|2|G|1198
5NDG|1|2|G|1199
5NDG|1|2|G|1200
5NDG|1|2|G|1201
5NDG|1|2|A|1202
5NDG|1|2|A|1203
5NDG|1|2|A|1204
5NDG|1|2|C|1205
5NDG|1|2|U|1206
5NDG|1|2|C|1207
5NDG|1|2|A|1208
5NDG|1|2|C|1209
*
5NDG|1|2|G|1454
5NDG|1|2|G|1455
5NDG|1|2|C|1456
5NDG|1|2|C|1457
5NDG|1|2|G|1458
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C5
- 40S ribosomal protein S15
- Chain C8
- 40S ribosomal protein S18-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain E1
- Ubiquitin-40S ribosomal protein S31
- Chain SM
- Suppressor protein STM1
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