J3_5NDG_082
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 5NDG|1|6|U|238, 5NDG|1|6|C|239, 5NDG|1|6|U|240, 5NDG|1|6|U|241
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDG|1|6|A|213
5NDG|1|6|G|214
5NDG|1|6|A|215
5NDG|1|6|U|216
5NDG|1|6|A|217
5NDG|1|6|A|218
5NDG|1|6|A|219
5NDG|1|6|A|220
5NDG|1|6|A|221
5NDG|1|6|A|222
5NDG|1|6|U|223
5NDG|1|6|C|224
5NDG|1|6|A|225
5NDG|1|6|A|226
5NDG|1|6|U|227
5NDG|1|6|G|228
*
5NDG|1|6|C|237
5NDG|1|6|U|238
5NDG|1|6|C|239
5NDG|1|6|U|240
5NDG|1|6|U|241
5NDG|1|6|U|242
5NDG|1|6|G|243
*
5NDG|1|6|C|250
5NDG|1|6|A|251
5NDG|1|6|U|252
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s6
- 40S ribosomal protein S6-A
- Chain s8
- 40S ribosomal protein S8-A
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